STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47321.1Glycine C-acetyltransferase. (401 aa)    
Predicted Functional Partners:
AEI47402.1
Aminotransferase class I and II.
  
  
 
0.929
AEI47322.1
Hypothetical protein.
   
 0.928
Runsl_3923
tRNA-Gln.
 
 
 0.913
AEI47323.1
NAD-dependent epimerase/dehydratase.
  
 0.886
AEI51406.1
L-threonine 3-dehydrogenase.
 
 
 0.753
AEI47324.1
Hypothetical protein.
 
     0.687
AEI47166.1
3-oxoacyl-(acyl-carrier-protein) synthase 2.
   
 0.613
AEI47320.1
Regulatory protein TetR.
     
 0.473
AEI48170.1
3-hydroxyacyl-CoA dehydrogenase NAD-binding protein.
  
 0.440
AEI51807.1
3-hydroxybutyryl-CoA epimerase.
  
 0.440
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.