STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47349.1Transcriptional repressor, CopY family. (122 aa)    
Predicted Functional Partners:
AEI47348.1
Peptidase M56 BlaR1.
 
 
 0.996
AEI46829.1
TonB family protein.
 
 
 0.943
Runsl_3601
Peptidase M56 BlaR1.
 
 
 0.943
AEI50037.1
Peptidase M56 BlaR1.
  
 
 0.942
AEI49961.1
Transcriptional repressor, CopY family.
  
     0.639
AEI50036.1
Transcriptional repressor, CopY family.
  
     0.532
AEI51884.1
DNA mismatch repair protein MutS domain protein.
  
     0.496
AEI46613.1
Hypothetical protein.
 
  
 0.472
AEI47347.1
GtrA family protein.
       0.438
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.