STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47354.1Aspartate 1-decarboxylase. (116 aa)    
Predicted Functional Partners:
AEI47353.1
Pantothenate synthetase.
 
 0.999
AEI47255.1
3-methyl-2-oxobutanoatehydroxymethyltransferase.
 
  
 0.970
AEI49202.1
Aldehyde Dehydrogenase.
     
 0.904
AEI48519.1
Putative transcriptional acitvator, Baf family.
 
  
 0.863
AEI46608.1
L-asparaginase, type I.
     
 0.830
AEI49178.1
L-asparaginase, type II.
     
 0.830
AEI49947.1
Adenylosuccinate synthetase.
    
 0.828
AEI51415.1
Aspartate transaminase.
    
 0.822
AEI47593.1
L-aspartate oxidase.
    
 0.818
AEI46642.1
Argininosuccinate synthase.
     
  0.800
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.