STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47355.1Integral membrane protein. (347 aa)    
Predicted Functional Partners:
AEI47356.1
rfaE bifunctional protein.
       0.819
AEI47354.1
Aspartate 1-decarboxylase.
       0.713
AEI47357.1
Peptidase membrane zinc metallopeptidase.
       0.625
AEI47446.1
Restriction endonuclease, type I, EcoRI, R subunit/Type III.
  
     0.583
AEI50588.1
Outer membrane assembly lipoprotein YfiO.
  
     0.583
AEI51183.1
TPR repeat-containing protein.
  
     0.581
AEI50587.1
Hypothetical protein.
  
     0.562
AEI47353.1
Pantothenate synthetase.
       0.515
AEI46540.1
ATP-dependent Clp protease adaptor protein ClpS.
  
     0.498
Runsl_5359
Endonuclease/exonuclease/phosphatase.
 
  
 0.490
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.