STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47359.1Pyrroline-5-carboxylate reductase. (267 aa)    
Predicted Functional Partners:
AEI48352.1
Proline dehydrogenase.
   
 0.933
AEI50165.1
Proline racemase.
    
 0.914
AEI47905.1
Delta-1-pyrroline-5-carboxylate dehydrogenase.
   
 
 0.908
AEI49047.1
Glutamate 5-kinase.
 
 0.894
AEI48979.1
4-hydroxyproline epimerase.
    
 0.829
AEI50282.1
FAD dependent oxidoreductase.
  
 
 0.815
AEI46735.1
Protein of unknown function UPF0001.
  
 0.737
AEI47350.1
Gamma-glutamyl phosphate reductase.
 
 
 0.701
AEI46858.1
Aspartate kinase.
 
  
 0.571
AEI47358.1
PKD domain containing protein.
       0.554
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.