STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47378.1YdjC family protein. (330 aa)    
Predicted Functional Partners:
Runsl_0942
Beta-lactamase.
       0.544
AEI49140.1
Hypothetical protein.
 
     0.543
AEI50363.1
Phosphoesterase.
  
     0.532
AEI46501.1
Hypothetical protein.
 
     0.500
AEI46498.1
Neuraminidase (sialidase)-like protein.
     0.494
AEI46502.1
Hypothetical protein.
  
     0.487
AEI50985.1
Hypothetical protein.
  
     0.478
AEI49131.1
Hypothetical protein.
 
     0.475
AEI48883.1
RagB/SusD domain-containing protein.
  
     0.466
AEI48321.1
Hypothetical protein.
 
     0.435
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.