STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI47379.1Hypothetical protein. (326 aa)    
Predicted Functional Partners:
AEI47380.1
Glycosyl transferase family 2.
  
    0.655
AEI51795.1
Protein of unknown function DUF303 acetylesterase.
  
    0.648
AEI50325.1
Glycosyl transferase family 39.
  
     0.598
AEI46636.1
Glycosyl transferase family 39.
  
     0.576
AEI51196.1
Protein of unknown function DUF303 acetylesterase.
  
     0.496
AEI49877.1
Hypothetical protein.
  
     0.454
AEI47802.1
1,4-alpha-glucan branching enzyme.
   
 0.451
AEI48082.1
Isoamylase N-terminal domain-containing protein.
   
 0.451
AEI48415.1
1,4-alpha-glucan-branching enzyme.
   
 0.451
AEI50900.1
Tetratricopeptide TPR_1 repeat-containing protein.
  
 
   0.447
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.