STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI47394.1Ribosomal protein L11 methyltransferase. (277 aa)    
Predicted Functional Partners:
AEI48240.1
Ribosomal protein L11.
  
 
 
 0.898
AEI50486.1
Ribosomal RNA small subunit methyltransferase E.
 
  
 0.823
AEI49455.1
Chaperone protein dnaJ.
  
  
 0.817
AEI47395.1
Epimerase.
       0.773
AEI48457.1
MutS2 protein.
 
     0.644
AEI48569.1
Fmu (Sun) domain protein.
 
  
 0.616
AEI51824.1
Ribosomal RNA small subunit methyltransferase I.
 
  
 0.557
AEI47398.1
Fmu (Sun) domain protein.
 
  
 0.555
AEI47393.1
D-lactate dehydrogenase (cytochrome).
       0.530
AEI47392.1
Hypothetical protein.
       0.520
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.