STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI47404.1Regulatory protein MarR. (176 aa)    
Predicted Functional Partners:
AEI51270.1
Hypothetical protein.
  
     0.645
AEI50962.1
Gliding motility-associated protein GldC.
  
     0.623
AEI46681.1
Hypothetical protein.
  
     0.589
AEI47403.1
Hypothetical protein.
       0.558
AEI46589.1
Hypothetical protein.
 
     0.550
AEI50079.1
Hypothetical protein.
  
     0.540
AEI48596.1
Hypothetical protein.
  
     0.529
AEI47514.1
Hypothetical protein.
  
     0.521
AEI51922.1
Hypothetical protein.
  
     0.502
AEI50903.1
Protein of unknown function DUF349.
  
     0.495
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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