STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47406.1Outer membrane efflux protein. (451 aa)    
Predicted Functional Partners:
AEI47407.1
Efflux transporter, RND family, MFP subunit.
 
  0.961
AEI47408.1
Acriflavin resistance protein.
 
   0.843
AEI47333.1
Efflux transporter, RND family, MFP subunit.
  
  0.809
AEI47334.1
Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family.
 
  0.798
AEI49344.1
Efflux transporter, RND family, MFP subunit.
 
  0.791
AEI47139.1
Efflux transporter, RND family, MFP subunit.
 
  0.781
AEI50427.1
Efflux transporter, RND family, MFP subunit.
 
  0.767
AEI49207.1
Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family.
 
  0.760
AEI51917.1
Efflux transporter, RND family, MFP subunit.
 
  0.758
AEI49206.1
Efflux transporter, RND family, MFP subunit.
  
  0.756
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.