STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI47406.1Outer membrane efflux protein. (451 aa)    
Predicted Functional Partners:
AEI47407.1
Efflux transporter, RND family, MFP subunit.
 
  0.932
AEI47408.1
Acriflavin resistance protein.
  0.856
AEI47405.1
Regulatory protein TetR.
       0.663
AEI50334.1
OmpA/MotB domain protein.
   
 0.661
AEI48773.1
Outer membrane protein assembly complex, YaeT protein.
  
   
 0.619
AEI47333.1
Efflux transporter, RND family, MFP subunit.
 
  0.575
AEI47870.1
MotA/TolQ/ExbB proton channel.
  
   
 0.574
AEI49449.1
Efflux transporter, RND family, MFP subunit.
 
 0.538
AEI49344.1
Efflux transporter, RND family, MFP subunit.
 
  0.527
AEI48736.1
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family.
  
     0.525
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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