STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47407.1Efflux transporter, RND family, MFP subunit. (396 aa)    
Predicted Functional Partners:
AEI47406.1
Outer membrane efflux protein.
 
  0.961
AEI47408.1
Acriflavin resistance protein.
 
   0.961
AEI49934.1
Heavy metal efflux pump, CzcA family.
 
 
 0.792
AEI49638.1
Efflux transporter, RND family, MFP subunit.
  
  
  0.760
AEI47405.1
Regulatory protein TetR.
 
     0.747
AEI49450.1
Outer membrane efflux protein.
  
  0.733
AEI50428.1
Outer membrane efflux protein.
 
  0.727
AEI47138.1
Acriflavin resistance protein.
 
   0.717
AEI47332.1
Outer membrane efflux protein.
 
  0.701
AEI51916.1
Acriflavin resistance protein.
 
   0.693
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.