STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47411.1Protein of unknown function DUF433. (75 aa)    
Predicted Functional Partners:
AEI47410.1
Hypothetical protein.
     
 0.782
AEI48300.1
Hypothetical protein.
 
   
 0.760
AEI47409.1
methionine-R-sulfoxide reductase.
       0.752
AEI49099.1
Hypothetical protein.
 
   
 0.745
AEI48168.1
Hypothetical protein.
 
   
 0.652
AEI47412.1
Protein of unknown function DUF1684.
       0.548
AEI47192.1
Uncharacterized protein family UPF0150.
  
     0.512
AEI47078.1
HEPN domain protein.
  
     0.444
Runsl_0751
YcfA family protein.
  
     0.427
AEI47432.1
Protein of unknown function DUF433.
  
     0.425
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.