STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47418.1Transcriptional regulator, GntR family. (339 aa)    
Predicted Functional Partners:
AEI47604.1
Carbohydrate kinase, FGGY.
 
     0.757
AEI47419.1
UBA/THIF-type NAD/FAD binding protein.
       0.714
AEI47602.1
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
 
     0.679
AEI47603.1
Xylose isomerase domain-containing protein TIM barrel.
 
     0.587
AEI48606.1
Glycoside hydrolase family 2 sugar binding protein.
  
     0.570
AEI47420.1
TatD-related deoxyribonuclease.
       0.512
AEI48468.1
UPF0301 protein yqgE.
   
    0.476
AEI49982.1
RagB/SusD domain-containing protein.
  
     0.475
AEI48509.1
Cytoplasmic protein.
   
    0.435
AEI49983.1
TonB-dependent receptor plug.
  
     0.424
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.