STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47439.1Xylose isomerase domain-containing protein TIM barrel. (309 aa)    
Predicted Functional Partners:
AEI47628.1
2-hydroxy-3-oxopropionate reductase.
 
 
 0.930
AEI47318.1
Xylose isomerase domain-containing protein TIM barrel.
  
  
 
0.908
AEI49289.1
Xylose isomerase domain-containing protein TIM barrel.
  
  
 
0.908
AEI50282.1
FAD dependent oxidoreductase.
     
  0.800
AEI50227.1
Oxidoreductase domain protein.
 
    0.777
AEI50328.1
Hypothetical protein.
  
     0.637
AEI50830.1
Protein of unknown function DUF1080.
  
     0.637
AEI50415.1
Oxidoreductase domain protein.
 
    0.596
AEI50228.1
Sulphatase-modifying factor protein.
 
     0.565
AEI46873.1
Protein of unknown function DUF1080.
  
     0.564
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.