STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47443.1o-succinylbenzoate--CoA ligase. (351 aa)    
Predicted Functional Partners:
AEI50331.1
Mandelate racemase/muconate lactonizing protein.
 
  0.995
AEI50087.1
Naphthoate synthase.
 
  
 0.982
AEI46631.1
2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylatesynthase.
 
  
 0.832
AEI47444.1
Rieske (2Fe-2S) iron-sulfur domain protein.
  
   0.828
AEI46838.1
Chorismate binding domain-containing protein.
 
   
 0.819
AEI47449.1
1,4-dihydroxy-2-naphthoateoctaprenyltransferase.
 
   
 0.819
AEI47442.1
Hypothetical protein.
       0.707
AEI48081.1
Phenylacetic acid degradation-related protein.
 
   
 0.692
AEI51880.1
Enoyl-CoA hydratase/isomerase.
 
 
 0.677
AEI48110.1
Ribosomal protein L6.
    
  0.623
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.