STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI47443.1o-succinylbenzoate--CoA ligase. (351 aa)    
Predicted Functional Partners:
AEI50331.1
Mandelate racemase/muconate lactonizing protein.
 
  0.995
AEI50087.1
Naphthoate synthase.
 
  
 0.980
AEI48110.1
Ribosomal protein L6.
    
 0.850
AEI47444.1
Rieske (2Fe-2S) iron-sulfur domain protein.
  
   0.826
AEI46631.1
2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylatesynthase.
 
  
 0.814
AEI46838.1
Chorismate binding domain-containing protein.
 
   
 0.800
AEI47449.1
1,4-dihydroxy-2-naphthoateoctaprenyltransferase.
 
   
 0.796
AEI46894.1
Linalool 8-monooxygenase.
  
 0.760
AEI47158.1
Unspecific monooxygenase.
  
 0.760
AEI47592.1
Ribosomal protein L13.
    
 
 0.734
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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