STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47450.1D-lactate dehydrogenase (cytochrome). (990 aa)    
Predicted Functional Partners:
AEI49498.1
Lactate utilization protein B/C.
  
 
 0.787
AEI50734.1
Electron transfer flavoprotein alpha/beta-subunit.
  
 
 0.680
AEI50733.1
Electron transfer flavoprotein alpha subunit.
  
 
 0.654
AEI49499.1
Lactate utilization protein B/C.
  
 
 0.649
AEI51801.1
NADH-quinone oxidoreductase, F subunit.
  
 0.584
AEI51123.1
Malic protein NAD-binding protein.
  
  
 0.539
Runsl_3317
L-lactate dehydrogenase (cytochrome).
  
 0.538
AEI51296.1
Lactate 2-monooxygenase.
  
 0.538
AEI50717.1
Glutamate synthase (ferredoxin).
     
 0.501
AEI51224.1
Glutamate synthase (NADPH).
   
 
 0.485
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.