STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47455.1Ribonucleoside-diphosphate reductase, alpha subunit. (815 aa)    
Predicted Functional Partners:
AEI46619.1
Ribonucleoside-diphosphate reductase.
 
 0.999
AEI48896.1
Acyl-(acyl-carrier-protein) desaturase.
  
 
 0.956
AEI48468.1
UPF0301 protein yqgE.
   
 0.950
AEI49373.1
Cytidylate kinase.
  
 
 0.923
AEI47463.1
Guanylate kinase.
    
 0.920
AEI48624.1
Adenylate kinase.
   
 0.918
AEI48787.1
Nucleoside diphosphate kinase.
     
 0.916
AEI49949.1
(p)ppGpp synthetase I, SpoT/RelA.
   
 
  0.903
AEI48486.1
DNA polymerase I.
  
 
 0.889
AEI51932.1
Thymidylate synthase.
  
 
 0.880
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.