STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI47455.1Ribonucleoside-diphosphate reductase, alpha subunit. (815 aa)    
Predicted Functional Partners:
AEI46619.1
Ribonucleoside-diphosphate reductase.
 
 0.999
AEI48896.1
Acyl-(acyl-carrier-protein) desaturase.
  
 0.993
AEI48468.1
UPF0301 protein yqgE.
   
 0.992
AEI47463.1
Guanylate kinase.
    
 0.928
AEI49373.1
Cytidylate kinase.
  
 
 0.925
AEI48624.1
Adenylate kinase.
    
 0.919
AEI48787.1
Nucleoside diphosphate kinase.
     
 0.918
AEI47200.1
Pyruvate kinase.
     
 0.912
AEI49949.1
(p)ppGpp synthetase I, SpoT/RelA.
     
 0.904
AEI51932.1
Thymidylate synthase.
  
  
 0.870
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.