STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47457.1Glycosyl transferase family 2. (345 aa)    
Predicted Functional Partners:
AEI51124.1
Riboflavin biosynthesis protein RibF.
      0.863
AEI47456.1
UPF0133 protein ybaB.
       0.819
AEI47446.1
Restriction endonuclease, type I, EcoRI, R subunit/Type III.
 
     0.667
AEI50632.1
Protein of unknown function DUF164.
  
     0.617
AEI50587.1
Hypothetical protein.
  
     0.616
AEI46551.1
Protein of unknown function, membrane YfhO.
 
     0.612
AEI51002.1
dTDP-4-dehydrorhamnose reductase.
 
  
 0.606
AEI51854.1
DNA polymerase III, delta subunit.
 
     0.581
AEI47878.1
Dolichyl-phosphate beta-D-mannosyltransferase.
 
     0.572
AEI51005.1
dTDP-4-dehydrorhamnose 3,5-epimerase.
 
  
 0.566
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.