STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47458.1Cell shape determining protein, MreB/Mrl family. (341 aa)    
Predicted Functional Partners:
AEI47459.1
Rod shape-determining protein MreC.
 
 
 0.983
AEI50221.1
Penicillin-binding protein 2.
 
 
 0.870
AEI50220.1
Cell cycle protein.
 
 
 0.849
AEI48490.1
Protein-export membrane protein SecD.
  
  
 0.734
AEI51813.1
UDP-N-acetylglucosamine1- carboxyvinyltransferase.
 
  
 0.703
AEI48201.1
Cell division protein FtsZ.
  
 
 0.695
AEI49811.1
Peptidoglycan glycosyltransferase.
 
 
 
 0.675
AEI49950.1
Trigger factor.
  
   0.659
AEI48206.1
Cell cycle protein.
 
 
 0.656
AEI47460.1
Hypothetical protein.
       0.632
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.