STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47459.1Rod shape-determining protein MreC. (282 aa)    
Predicted Functional Partners:
AEI47458.1
Cell shape determining protein, MreB/Mrl family.
 
 
 0.983
AEI47460.1
Hypothetical protein.
 
    0.887
AEI49885.1
DNA repair protein RadC.
  
  
 0.848
AEI50221.1
Penicillin-binding protein 2.
 
 
 0.831
AEI49811.1
Peptidoglycan glycosyltransferase.
 
 
 0.662
AEI47837.1
Septum formation protein Maf.
  
  
 0.659
AEI50220.1
Cell cycle protein.
 
  
 0.607
AEI47214.1
Queuine tRNA-ribosyltransferase.
  
  
 0.584
AEI51182.1
Peptidoglycan glycosyltransferase.
  
 
 0.572
AEI48741.1
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B.
  
  
 0.542
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.