STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47460.1Hypothetical protein. (167 aa)    
Predicted Functional Partners:
AEI47459.1
Rod shape-determining protein MreC.
 
    0.887
AEI49649.1
Protein of unknown function DUF490.
 
     0.684
AEI48203.1
Hypothetical protein.
  
     0.677
AEI51169.1
Hypothetical protein.
  
     0.672
AEI46516.1
O-methyltransferase-like protein.
  
     0.660
AEI46523.1
PUR-alpha/beta/gamma DNA/RNA-binding protein.
  
     0.651
AEI47335.1
Putative membrane protein.
  
     0.648
AEI47458.1
Cell shape determining protein, MreB/Mrl family.
       0.632
AEI47738.1
Outer membrane lipoprotein carrier protein LolA.
  
     0.628
AEI49378.1
Putative membrane protein.
  
     0.621
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.