STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47474.1Succinyl-diaminopimelate desuccinylase. (361 aa)    
Predicted Functional Partners:
AEI46642.1
Argininosuccinate synthase.
 
 0.985
AEI48800.1
Acetylornithine transaminase.
 
 
 0.976
AEI49536.1
Arginine deiminase.
    
 0.906
AEI50963.1
N-acetyl-gamma-glutamyl-phosphate reductase.
 
 
 0.856
AEI48301.1
Argininosuccinate lyase.
 
  
 0.850
AEI47897.1
Acetylglutamate kinase.
 
  
 0.839
AEI48813.1
N-acetylornithine carbamoyltransferase.
 
  
 0.818
AEI46643.1
Hypothetical protein.
 
  
 0.811
AEI47473.1
Glyoxalase family protein.
       0.552
AEI46858.1
Aspartate kinase.
 
  
 0.513
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.