Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47482.1UPF0747 protein. (535 aa)    
Predicted Functional Partners:
AEI46654.1
LmbE family protein.
 
   
 0.789
AEI51668.1
Protein of unknown function DUF1094.
  
   
 0.785
AEI49533.1
Glycosyl transferase group 1.
  
   
 0.782
AEI49280.1
Hypothetical protein.
  
  
 0.707
AEI51455.1
Protein of unknown function DUF2480.
  
     0.677
AEI50730.1
Hypothetical protein.
  
     0.672
AEI50703.1
Hypothetical protein.
  
     0.670
AEI49796.1
Hypothetical protein.
  
     0.646
AEI50962.1
Gliding motility-associated protein GldC.
  
     0.636
AEI49316.1
Hypothetical protein.
  
     0.623
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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