STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI47496.1Hypothetical protein. (439 aa)    
Predicted Functional Partners:
AEI47495.1
Hypothetical protein.
       0.783
AEI47497.1
Uridylate kinase.
       0.773
AEI47494.1
Ribosome-recycling factor.
       0.768
AEI46994.1
Hypothetical protein.
  
     0.753
AEI47498.1
Biotin/lipoyl attachment domain-containing protein.
       0.586
AEI50530.1
SMC domain protein.
 
     0.548
AEI49304.1
SMC domain protein.
 
     0.510
AEI49425.1
DNA polymerase beta domain protein region.
  
     0.503
AEI47499.1
Protein of unknown function DUF6 transmembrane.
       0.495
AEI47572.1
Hypothetical protein.
  
     0.469
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.