STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47497.1Uridylate kinase. (240 aa)    
Predicted Functional Partners:
AEI47494.1
Ribosome-recycling factor.
  
 0.997
AEI47590.1
Ribosomal protein S2.
 
  
 0.978
AEI47589.1
Elongation factor Ts.
 
  
 0.974
AEI47744.1
Uracil phosphoribosyltransferase.
   
 
 0.956
AEI46611.1
Multifunctional protein surE.
  
  
 0.933
AEI48787.1
Nucleoside diphosphate kinase.
  
 
 0.930
AEI48079.1
Orotidine 5'-phosphate decarboxylase.
   
 
 0.927
AEI48286.1
Uridine kinase.
   
 
 0.920
AEI49735.1
Uracil phosphoribosyltransferase.
     
 0.915
AEI50882.1
Phosphoribosyltransferase.
     
 0.915
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.