STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47501.1Peptidase S41. (1079 aa)    
Predicted Functional Partners:
AEI46853.1
Tetratricopeptide TPR_2 repeat-containing protein.
   
 
 0.852
AEI46698.1
Peptidase S9 prolyl oligopeptidase.
  
     0.691
AEI47360.1
Peptidase S9 prolyl oligopeptidase active site domain-containing protein.
  
     0.596
AEI47500.1
Hypothetical protein.
       0.526
AEI49514.1
Peptidase M14 carboxypeptidase A.
  
     0.493
AEI49513.1
Peptidase M14 carboxypeptidase A.
  
     0.473
AEI47150.1
Peptidase M14 carboxypeptidase A.
  
     0.458
AEI49778.1
Glycosyl transferase family 2.
  
     0.453
AEI47499.1
Protein of unknown function DUF6 transmembrane.
   
   0.408
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.