STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47507.1Glutamate carboxypeptidase II. (725 aa)    
Predicted Functional Partners:
AEI46816.1
Peptidase M14 carboxypeptidase A.
  
     0.668
AEI47508.1
Protein of unknown function DUF1549.
       0.551
AEI47509.1
Protein of unknown function DUF1501.
       0.551
AEI46939.1
Carboxylesterase type B.
 
  0.505
AEI48825.1
Peptidase S9 prolyl oligopeptidase active site domain protein.
  
    0.497
AEI47309.1
Hypothetical protein.
  
     0.446
AEI47506.1
Hypothetical protein.
       0.444
AEI51733.1
Inositol oxygenase.
  
    0.422
AEI48932.1
Hypothetical protein.
  
     0.408
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.