STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47518.1Alpha/beta hydrolase fold protein. (284 aa)    
Predicted Functional Partners:
AEI47519.1
Hypothetical protein.
       0.773
AEI51807.1
3-hydroxybutyryl-CoA epimerase.
 
  
 0.704
AEI47106.1
1-phosphofructokinase.
   
    0.633
AEI47517.1
Hypothetical protein.
       0.572
AEI47520.1
Xylulokinase.
       0.566
AEI48170.1
3-hydroxyacyl-CoA dehydrogenase NAD-binding protein.
   
 0.479
AEI47762.1
phospholipase/Carboxylesterase.
     
 0.472
AEI50370.1
phospholipase/Carboxylesterase.
     
 0.472
AEI47341.1
Hypothetical protein.
   
    0.467
AEI48856.1
Hypothetical protein.
   
    0.467
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.