STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47523.1Siroheme synthase. (188 aa)    
Predicted Functional Partners:
AEI48843.1
uroporphyrin-III C-methyltransferase.
 
 0.999
AEI48940.1
uroporphyrin-III C-methyltransferase.
 
 0.999
AEI48542.1
Protein of unknown function DUF81.
    
 0.909
AEI48939.1
Ferredoxin--nitrite reductase.
 
  
 0.859
AEI48926.1
Porphobilinogen deaminase.
 
  
 0.723
AEI47522.1
Protein of unknown function DUF2147.
       0.686
AEI47926.1
Porphobilinogen synthase.
 
   
 0.602
AEI48544.1
Adenylylsulfate reductase, thioredoxin dependent.
 
  
 0.595
AEI48546.1
Sulfate adenylyltransferase, small subunit.
  
  
 0.525
AEI51593.1
Methionine synthase.
  
  
 0.515
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.