STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Runsl_1103Phosphoglucosamine mutase. (464 aa)    
Predicted Functional Partners:
AEI48575.1
Mannose-1-phosphate guanylyltransferase.
 
 0.962
AEI49400.1
Mannose-6-phosphate isomerase type II.
  
 
 0.917
AEI50687.1
NUDIX hydrolase.
  
 
  0.901
AEI49247.1
Conserved hypothetical protein CHP00159.
   
 
 0.834
AEI51601.1
Hypothetical protein.
 
     0.719
AEI49399.1
Metallophosphoesterase.
 
     0.669
AEI46551.1
Protein of unknown function, membrane YfhO.
 
    0.651
AEI49288.1
Polyprenyl synthetase.
 
   
 0.637
AEI48773.1
Outer membrane protein assembly complex, YaeT protein.
  
    0.615
AEI46595.1
Glucosamine--fructose-6-phosphate aminotransferase (isomerizing).
  
 
 0.596
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.