STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47536.1NADPH:quinone reductase. (323 aa)    
Predicted Functional Partners:
AEI48646.1
Enoyl-CoA hydratase.
 
 0.955
AEI47166.1
3-oxoacyl-(acyl-carrier-protein) synthase 2.
 
 
  
 0.905
Runsl_3923
tRNA-Gln.
 
    
 0.904
AEI48559.1
Aminoglycoside phosphotransferase.
 
   0.720
AEI46656.1
Thioredoxin reductase.
      0.689
AEI47535.1
Hypothetical protein.
       0.661
AEI48252.1
(R)-benzylsuccinyl-CoA dehydrogenase.
 
 
 0.557
AEI50525.1
o-succinylbenzoate--CoA ligase.
 
 
 0.481
AEI48584.1
Long-chain-fatty-acid--CoA ligase.
  
 
 0.442
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.