STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47539.1Hypothetical protein. (509 aa)    
Predicted Functional Partners:
AEI47540.1
TonB-dependent receptor plug.
 
 
   0.934
AEI47538.1
TonB-dependent receptor plug.
 
     0.798
AEI50708.1
TonB-dependent receptor plug.
  
 
   0.761
AEI49153.1
Hypothetical protein.
  
     0.712
AEI51192.1
TonB-dependent receptor plug.
 
 
   0.699
AEI48327.1
TonB-dependent receptor plug.
 
     0.694
AEI51708.1
Methyltransferase type 11.
  
     0.684
AEI46871.1
RagB/SusD domain-containing protein.
  
 
   0.659
AEI46635.1
Methyltransferase type 12.
  
     0.633
AEI49409.1
LytTr DNA-binding region.
  
     0.629
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.