Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47546.1Hypothetical protein. (430 aa)    
Predicted Functional Partners:
AEI47547.1
RNA polymerase, sigma-24 subunit, ECF subfamily.
  
    0.826
AEI47540.1
TonB-dependent receptor plug.
 
 
 0.815
AEI49138.1
TonB-dependent receptor plug.
 
 
 0.792
AEI51235.1
TonB-dependent receptor plug.
 
 
 0.791
Runsl_4120
TonB-dependent receptor.
 
 
 0.756
AEI49016.1
RagB/SusD domain-containing protein.
  
     0.672
AEI47853.1
Biopolymer transport protein ExbD/TolR.
 
 
 0.622
AEI49015.1
TonB-dependent receptor plug.
 
   0.600
AEI47545.1
Hypothetical protein.
 
 
   0.587
AEI47548.1
Von Willebrand factor type A.
 
     0.584
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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