STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47586.1Conserved TM helix repeat-containing protein. (277 aa)    
Predicted Functional Partners:
AEI47588.1
RNA polymerase, sigma-24 subunit, ECF subfamily.
 
     0.858
AEI47587.1
Hypothetical protein.
       0.757
AEI47585.1
Hypothetical protein.
       0.701
AEI49377.1
Conserved repeat domain protein.
  
     0.664
AEI47872.1
Hypothetical protein.
  
     0.658
AEI47824.1
Glycine dehydrogenase (decarboxylating).
   
    0.642
AEI47584.1
Large conductance mechanosensitive channel protein.
     
 0.626
AEI50639.1
OmpA/MotB domain protein.
 
     0.554
AEI47873.1
OmpA/MotB domain protein.
 
     0.546
AEI49378.1
Putative membrane protein.
  
     0.531
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.