STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI47596.1Galactonate dehydratase. (477 aa)    
Predicted Functional Partners:
AEI47595.1
Demethylmenaquinone methyltransferase-like protein.
    0.841
AEI51697.1
Demethylmenaquinone methyltransferase-like protein.
 
    0.753
AEI46927.1
Demethylmenaquinone methyltransferase-like protein.
    0.749
AEI50811.1
Hypothetical protein.
  
     0.597
AEI50812.1
TonB-dependent receptor plug.
  
     0.581
AEI47597.1
Hypothetical protein.
       0.497
AEI46665.1
Chloromuconate cycloisomerase.
  
     0.465
AEI49021.1
Mandelate racemase/muconate lactonizing protein.
  
     0.443
Runsl_4441
Protein of unknown function DUF187.
 
     0.413
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.