STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47602.1Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase. (710 aa)    
Predicted Functional Partners:
AEI47604.1
Carbohydrate kinase, FGGY.
 
   
 0.922
AEI47603.1
Xylose isomerase domain-containing protein TIM barrel.
 
   
 0.913
AEI47832.1
L-rhamnose mutarotase.
 
  
 0.756
AEI48551.1
Transcriptional regulator, GntR family.
 
     0.688
AEI47418.1
Transcriptional regulator, GntR family.
 
     0.679
AEI48972.1
alpha-L-rhamnosidase.
 
 
   0.593
AEI47601.1
NAD(P)H quinone oxidoreductase, PIG3 family.
  
   0.552
AEI48906.1
Transmembrane prediction.
 
     0.507
AEI49030.1
Glycoside hydrolase family 2 sugar binding protein.
 
     0.491
AEI46897.1
alpha-L-rhamnosidase.
 
 
   0.477
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.