Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AEI47628.12-hydroxy-3-oxopropionate reductase. (286 aa)    
Predicted Functional Partners:
AEI47318.1
Xylose isomerase domain-containing protein TIM barrel.
 
 
 0.930
AEI47439.1
Xylose isomerase domain-containing protein TIM barrel.
 
 
 0.930
AEI49289.1
Xylose isomerase domain-containing protein TIM barrel.
 
 
 0.929
AEI51181.1
Glycerate kinase.
  
 
 0.915
AEI47625.1
4-hydroxy-2-oxovalerate aldolase.
 
 
 0.782
AEI46971.1
3-oxoadipate enol-lactonase.
 
  
 0.701
AEI47631.1
Glucarate dehydratase.
    0.628
AEI47627.1
Galactarate dehydratase.
 
  
 0.604
AEI47629.1
Mannonate dehydratase.
       0.598
AEI46967.1
3-oxoacid CoA-transferase, B subunit.
  
  
 0.467
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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