STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47695.1Carboxynorspermidine decarboxylase. (400 aa)    
Predicted Functional Partners:
AEI49847.1
Saccharopine dehydrogenase.
 
 
 0.982
AEI47694.1
Patatin.
       0.559
AEI47271.1
Histidine biosynthesis bifunctional protein hisIE.
  
  
 0.504
AEI47696.1
Transcriptional regulator, BadM/Rrf2 family.
       0.496
AEI46858.1
Aspartate kinase.
  
  
 0.494
AEI50099.1
Glycerol kinase.
   
 0.494
AEI47030.1
GMP synthase (glutamine-hydrolyzing).
  
  
 0.470
AEI50235.1
Chorismate mutase.
     
 0.459
AEI51593.1
Methionine synthase.
  
  
 0.455
AEI51876.1
Inosine-5'-monophosphate dehydrogenase.
  
 
 0.434
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.