STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47727.1Radical SAM superfamily protein. (354 aa)    
Predicted Functional Partners:
AEI47726.1
Alkylhydroperoxidase like protein, AhpD family.
 
    0.913
AEI47934.1
Protein of unknown function DUF2064.
 
     0.815
AEI50473.1
Methyltransferase type 11.
 
    0.778
AEI47207.1
Glycosyl transferase family 2.
 
     0.753
AEI47839.1
Hypothetical protein.
 
     0.677
AEI47834.1
Protein of unknown function DUF547.
 
     0.617
AEI48041.1
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
 
  
 0.562
AEI47732.1
Na+/solute symporter.
 
     0.434
AEI47728.1
Helix-turn-helix domain protein.
       0.433
AEI47729.1
HipA N-terminal domain protein.
       0.433
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.