STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI47733.1Hypothetical protein. (480 aa)    
Predicted Functional Partners:
AEI47731.1
Hypothetical protein.
 
    0.948
AEI47732.1
Na+/solute symporter.
 
     0.946
AEI47734.1
TonB-dependent receptor plug.
     0.921
AEI48327.1
TonB-dependent receptor plug.
     0.753
AEI51192.1
TonB-dependent receptor plug.
 
   0.749
AEI49136.1
TonB-dependent receptor plug.
     0.548
AEI50367.1
TonB-dependent receptor plug.
 
   0.546
AEI51896.1
parB-like partition protein.
  
 
 0.532
AEI47540.1
TonB-dependent receptor plug.
  
 
   0.521
AEI47538.1
TonB-dependent receptor plug.
 
     0.499
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.