STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47734.1TonB-dependent receptor plug. (1079 aa)    
Predicted Functional Partners:
AEI47733.1
Hypothetical protein.
 
     0.920
AEI47731.1
Hypothetical protein.
 
     0.919
AEI47732.1
Na+/solute symporter.
 
     0.919
AEI48328.1
Hypothetical protein.
 
     0.751
AEI51191.1
Hypothetical protein.
 
     0.729
AEI47537.1
Hypothetical protein.
 
     0.577
AEI49694.1
Hypothetical protein.
 
     0.577
AEI47539.1
Hypothetical protein.
 
     0.566
AEI49135.1
Hypothetical protein.
 
     0.553
AEI47735.1
Fatty acid hydroxylase.
       0.506
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.