Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47738.1Outer membrane lipoprotein carrier protein LolA. (209 aa)    
Predicted Functional Partners:
AEI47253.1
Hypothetical protein.
  
 
 
 0.960
AEI49649.1
Protein of unknown function DUF490.
  
  
 0.770
AEI49882.1
Gliding motility-associated protein GldM.
  
     0.758
AEI46657.1
OmpA/MotB domain protein.
 
 
 0.750
AEI47896.1
DNA repair protein recO.
 
     0.729
AEI46984.1
Hypothetical protein.
  
     0.727
AEI49881.1
Gliding motility-associated protein GldL.
  
     0.724
AEI47739.1
Cell division protein FtsK/SpoIIIE.
 
  
 0.719
AEI48148.1
PorT-related protein.
  
     0.705
AEI47923.1
Tetratricopeptide TPR_2 repeat-containing protein.
 
  
 0.665
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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