Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47754.1Hypothetical protein. (305 aa)    
Predicted Functional Partners:
AEI48967.1
Hypothetical protein.
 
     0.970
AEI49408.1
Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase.
 
      0.899
AEI47753.1
Cytochrome-c peroxidase.
       0.598
AEI51501.1
Hypothetical protein.
  
     0.598
AEI47752.1
Protein of unknown function DUF2261, transmembrane.
       0.501
AEI48968.1
Hypothetical protein.
  
    0.497
AEI51176.1
Carboxylesterase type B.
  
     0.476
AEI46939.1
Carboxylesterase type B.
  
     0.453
AEI47755.1
Bifunctional deaminase-reductase domain protein.
       0.440
AEI47756.1
Hypothetical protein.
       0.420
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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