STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47755.1Bifunctional deaminase-reductase domain protein. (173 aa)    
Predicted Functional Partners:
AEI51932.1
Thymidylate synthase.
  
 
 0.863
AEI47756.1
Hypothetical protein.
       0.741
AEI48400.1
Sigma 54 interacting domain protein.
   
 
 0.645
AEI47757.1
Domain of unknown function DUF1905.
 
     0.622
AEI48955.1
ATP-dependent Clp protease proteolytic subunit.
    
 
 0.604
AEI50894.1
FolC bifunctional protein.
     
 0.563
AEI48711.1
Aminomethyltransferase.
  
 
 0.543
AEI48210.1
Glycine cleavage system H protein.
    
 0.532
AEI47758.1
Activator of Hsp90 ATPase 1 family protein.
 
     0.505
AEI47760.1
Putative RNA polymerase, sigma-24 subunit, ECF subfamily.
 
     0.465
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.