STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47768.1Holliday junction ATP-dependent DNA helicase ruvB. (337 aa)    
Predicted Functional Partners:
AEI48916.1
Holliday junction ATP-dependent DNA helicase ruvA.
 
 0.995
AEI50478.1
Crossover junction endodeoxyribonuclease ruvC.
 
 0.930
AEI47292.1
Holliday junction ATP-dependent DNA helicase ruvB.
  
  
 
0.901
AEI48486.1
DNA polymerase I.
 
   
 0.734
Runsl_3366
DNA ligase (NAD+).
  
   
 0.710
AEI47248.1
Hypothetical protein.
  
    0.688
AEI47982.1
ATP-dependent chaperone ClpB.
 
 
 
 0.654
AEI49279.1
UvrABC system protein C.
 
 
 0.627
AEI47697.1
Excinuclease ABC, A subunit.
 
 
 0.621
AEI47504.1
Excinuclease ABC, A subunit.
 
 
 0.618
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.