STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Runsl_1357Hypothetical protein. (291 aa)    
Predicted Functional Partners:
AEI48836.1
Ribosomal protein S12.
  
 
 0.770
AEI46999.1
Beta-N-acetylhexosaminidase.
  
  
 0.541
AEI48432.1
Beta-N-acetylhexosaminidase., Beta-lactamase.
  
  
 0.541
AEI50234.1
Ribosome-binding factor A.
  
  
 0.540
AEI46479.1
Hypothetical protein.
  
  
 0.514
AEI46931.1
Xylan 1,4-beta-xylosidase.
  
  
 0.514
AEI50439.1
30S ribosomal protein S16.
   
 
 0.510
AEI48122.1
Ribosomal protein L2.
   
 
 0.507
AEI48109.1
Ribosomal protein L18.
   
 
 0.503
AEI48108.1
Ribosomal protein S5.
   
 
 0.502
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.