STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47807.1PKD domain containing protein. (253 aa)    
Predicted Functional Partners:
AEI46644.1
PKD domain containing protein.
     0.970
AEI48848.1
PKD domain containing protein.
     0.966
AEI46982.1
Carbohydrate binding family 6.
    
0.898
AEI50232.1
Glucose/sorbosone dehydrogenase-like protein.
 
      0.844
AEI51131.1
Glucose/sorbosone dehydrogenase.
 
      0.671
AEI47808.1
Fatty acid hydroxylase.
       0.528
AEI46874.1
Coagulation factor 5/8 type domain protein.
  
     0.505
AEI46593.1
Starch synthase.
   
    0.435
AEI47809.1
Oligoendopeptidase, M3 family.
       0.402
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.