STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47814.1Alkane 1-monooxygenase. (381 aa)    
Predicted Functional Partners:
AEI49202.1
Aldehyde Dehydrogenase.
  
  
 0.912
AEI51807.1
3-hydroxybutyryl-CoA epimerase.
  
   
 0.629
AEI47813.1
Protein of unknown function DUF1501.
       0.601
AEI47815.1
Hypothetical protein.
       0.499
AEI47816.1
Hypothetical protein.
       0.461
AEI47817.1
Putative signal transduction histidine kinase.
       0.461
AEI48091.1
Nitrate reductase.
  
     0.438
AEI51383.1
Fatty acid hydroxylase.
 
  
 0.437
AEI46840.1
Fatty acid hydroxylase.
 
  
 0.434
AEI51890.1
Nitric oxide dioxygenase.
 
  
 0.423
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.