STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47822.1Deoxyribodipyrimidine photo-lyase. (436 aa)    
Predicted Functional Partners:
AEI48885.1
Phytoene desaturase.
 
  
 0.641
AEI47821.1
Protein of unknown function DUF433.
       0.615
AEI47823.1
CBS domain containing membrane protein.
       0.596
AEI46513.1
Uracil-DNA glycosylase.
 
      0.586
AEI48884.1
Squalene/phytoene synthase.
 
   
 0.575
AEI50939.1
Naringenin-chalcone synthase.
    
   0.556
AEI48270.1
Phytoene desaturase.
 
  
 0.536
AEI47103.1
Cryptochrome, DASH family.
 
    
0.408
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.