STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI47825.1Xylan 1,4-beta-xylosidase. (559 aa)    
Predicted Functional Partners:
AEI48188.1
Coagulation factor 5/8 type domain protein.
    
 0.909
AEI51892.1
Alditol oxidase.
  
  
  0.854
AEI49041.1
Beta-glucuronidase.
  
  
  0.826
AEI50181.1
Putative L-arabinose isomerase protein.
  
  
  0.824
AEI49339.1
Xylose isomerase.
    
 0.811
AEI48695.1
Uronate isomerase.
     
 0.803
AEI46828.1
GHMP kinase.
     
  0.800
AEI49749.1
L-arabinose isomerase.
     
  0.800
AEI50700.1
Glycoside hydrolase family 30.
  
     0.683
AEI48606.1
Glycoside hydrolase family 2 sugar binding protein.
  
     0.601
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.